STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1315PFAM: protein of unknown function DUF1321; KEGG: ccs:CCNA_02187 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Cseg_0604
PFAM: Protein of unknown function DUF2312; KEGG: ccs:CCNA_03428 cytosolic protein; Belongs to the UPF0335 family.
  
   
 0.864
Cseg_0629
PFAM: protein of unknown function DUF1013; KEGG: ccs:CCNA_03401 cytosolic protein.
  
   
 0.856
Cseg_1665
PFAM: SmpA/OmlA domain protein; KEGG: ccs:CCNA_01427 lipoprotein, SmpA/OmlA family.
  
   
 0.844
Cseg_1314
PFAM: thioesterase superfamily protein; KEGG: ccs:CCNA_02188 cytosolic protein.
       0.814
Cseg_0148
TIGRFAM: double-strand break repair protein AddB; KEGG: ccs:CCNA_03651 ATP-dependent nuclease subunit B.
  
     0.760
Cseg_2177
PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: ccs:CCNA_01964 NADH dehydrogenase.
 
   
 0.759
Cseg_1313
PFAM: Peptidase C13, legumain asparaginyl peptidase; KEGG: ccs:CCNA_02189 peptidase, C13 family.
       0.749
Cseg_4214
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.743
Cseg_4247
PFAM: import inner membrane translocase subunit Tim44; KEGG: ccs:CCNA_03857 transporter.
  
     0.733
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.730
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.