STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1350PFAM: regulatory protein TetR; KEGG: ccs:CCNA_02161 transcriptional regulator, TetR family. (222 aa)    
Predicted Functional Partners:
Cseg_1349
KEGG: cak:Caul_3324 transglutaminase domain-containing protein; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.
       0.631
Cseg_1351
PFAM: glycosyl transferase family 2; KEGG: ccs:CCNA_02158 putative rhamnosyl transferase.
 
     0.571
Cseg_1348
KEGG: cak:Caul_3325 hypothetical protein.
       0.554
Cseg_1347
KEGG: cak:Caul_3327 major facilitator transporter; manually curated; PFAM: major facilitator superfamily MFS_1.
       0.470
Cseg_1215
PFAM: regulatory protein TetR; KEGG: ccs:CCNA_02578 transcriptional regulator, TetR family.
  
     0.462
Cseg_1353
KEGG: ccs:CCNA_02156 hypothetical protein.
 
     0.436
Cseg_4229
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ccs:CCNA_03875 quinone oxidoreductase.
      
 0.428
nadA
Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
      
 0.426
tatB
Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
      
 0.412
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.