STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1383PFAM: DSBA oxidoreductase; KEGG: cak:Caul_1446 DsbA oxidoreductase. (203 aa)    
Predicted Functional Partners:
Cseg_1382
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_02129 acyl-CoA dehydrogenase, short-chain specific.
       0.773
Cseg_1384
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_02128 acyl-CoA dehydrogenase.
       0.773
Cseg_1385
PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ccs:CCNA_02127 oxacillin resistance-associated protein FmtC.
       0.495
Cseg_4148
PFAM: MaoC domain protein dehydratase; KEGG: ccs:CCNA_03771 dehydrogenase with MaoC-like domain/dehydrogenase with MaoC-like domain.
  
     0.435
Cseg_1381
KEGG: cak:Caul_1444 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp.
       0.405
Cseg_3646
crotonyl-CoA reductase; KEGG: ccs:CCNA_03181 alcohol dehydrogenase; TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
  
     0.401
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.