STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1419KEGG: ccs:CCNA_02088 HesB protein family; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family. (110 aa)    
Predicted Functional Partners:
Cseg_0527
PFAM: nitrogen-fixing NifU domain protein; KEGG: ccs:CCNA_00494 transport protein.
  
  
 0.833
Cseg_2152
KEGG: ccs:CCNA_01941 cysteine desulfhydrase/selenocysteine lyase; PFAM: aminotransferase class V.
 
  
 0.762
Cseg_1286
KEGG: ccs:CCNA_02218 DnaJ-like protein DjlA; PFAM: protein of unknown function DUF1332; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
  
 
 0.758
Cseg_1200
Glutaredoxin-like protein; KEGG: ccs:CCNA_02591 glutaredoxin; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.753
Cseg_0012
PFAM: Scaffold protein Nfu/NifU; nitrogen-fixing NifU domain protein; KEGG: ccs:CCNA_00060 mitochondrial-type Fe-S cluster assembly protein NFU.
 
 
 0.718
Cseg_1420
TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ccs:CCNA_02087 deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; Belongs to the dGTPase family. Type 2 subfamily.
     
 0.686
Cseg_2115
PFAM: protein of unknown function DUF1080; KEGG: cak:Caul_4614 hypothetical protein.
    
 
 0.646
Cseg_0364
Folate-binding protein YgfZ; KEGG: ccs:CCNA_00389 aminomethyltransferase family protein; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; Belongs to the GcvT family.
 
 
 0.645
Cseg_1418
KEGG: ccs:CCNA_02090 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
     
 0.631
Cseg_0884
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
 
  
 0.610
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.