STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1528KEGG: ccs:CCNA_01342 ATPase, AAA family; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase. (433 aa)    
Predicted Functional Partners:
Cseg_1529
PFAM: pseudouridine synthase; KEGG: ccs:CCNA_01343 ribosomal large subunit pseudouridine synthase C.
       0.791
Cseg_1530
KEGG: ccs:CCNA_01344 hypothetical protein.
       0.767
Cseg_0202
TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; KEGG: ccs:CCNA_03578 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein.
 
 
 
 0.761
Cseg_1527
SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: ccs:CCNA_01341 endopeptidase DegP; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.
       0.676
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.665
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.616
Cseg_1523
KEGG: cak:Caul_1645 hypothetical protein.
       0.485
Cseg_1522
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ccs:CCNA_01338 glyoxalase family protein.
       0.469
Cseg_1525
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: cak:Caul_1647 activator of HSP90 ATPase 1 family protein.
       0.469
Cseg_1524
KEGG: ccs:CCNA_01339 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
       0.464
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.