STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1530KEGG: ccs:CCNA_01344 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Cseg_1528
KEGG: ccs:CCNA_01342 ATPase, AAA family; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase.
       0.767
Cseg_1529
PFAM: pseudouridine synthase; KEGG: ccs:CCNA_01343 ribosomal large subunit pseudouridine synthase C.
       0.761
Cseg_1527
SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: ccs:CCNA_01341 endopeptidase DegP; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.
       0.631
Cseg_1311
PFAM: endodeoxyribonuclease RusA; KEGG: ccs:CCNA_02192 hypothetical protein.
  
     0.583
Cseg_1944
KEGG: ccs:CCNA_01532 regulatory protein FlaY.
  
     0.577
Cseg_0553
KEGG: ccs:CCNA_00519 hypothetical protein.
  
     0.561
Cseg_3388
Flagellar hook-associated protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
     0.551
Cseg_1109
KEGG: ccs:CCNA_02667 flagellar basal-body protein FlbY.
  
     0.527
Cseg_1359
PFAM: Phosphoglycerate mutase; KEGG: ccs:CCNA_02152 phosphoglycerate mutase.
  
     0.519
Cseg_2201
PFAM: outer membrane chaperone Skp (OmpH); KEGG: ccs:CCNA_01991 hypothetical protein.
  
     0.498
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.