STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1537PFAM: ATP12 ATPase; KEGG: ccs:CCNA_02056 chaperone, ATP12 family protein. (241 aa)    
Predicted Functional Partners:
Cseg_0882
PFAM: Methyltransferase type 11; KEGG: ccs:CCNA_00874 biotin synthesis protein BioC.
  
     0.604
Cseg_1689
PFAM: ETC complex I subunit conserved region; KEGG: ccs:CCNA_01453 electron transport complex I subunit, NADH-ubiquinone oxidoreductase.
  
     0.565
Cseg_1535
PFAM: protein of unknown function DUF1501; KEGG: ccs:CCNA_02058 hypothetical protein.
       0.564
Cseg_1536
PFAM: Protein of unknown function DUF1800; KEGG: ccs:CCNA_02057 hypothetical protein.
       0.564
Cseg_1440
KEGG: ccs:CCNA_02066 phytoene synthase family protein.
 
     0.563
Cseg_1538
PFAM: carboxyl transferase; KEGG: ccs:CCNA_02054 propionyl-CoA carboxylase carboxyltransferase subunit.
     
 0.529
Cseg_3509
KEGG: ccs:CCNA_03105 molecular chaperones (DnaJ family); PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
  
 
 
 0.528
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
 
 0.527
Cseg_2177
PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: ccs:CCNA_01964 NADH dehydrogenase.
  
   
 0.523
Cseg_3700
Cobalt chelatase, pCobT subunit; SMART: von Willebrand factor type A; TIGRFAM: cobalt chelatase, pCobT subunit; KEGG: ccs:CCNA_00708 cobaltochelatase CobT subunit; PFAM: Cobalt chelatase CobT subunit.
  
     0.501
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.