STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1547PFAM: sugar transferase; KEGG: ccs:CCNA_01553 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase. (186 aa)    
Predicted Functional Partners:
Cseg_3994
TIGRFAM: capsular exopolysaccharide family; KEGG: ccs:CCNA_00163 chain length regulator/tyrosine-protein kinase (capsular polysaccharide biosynthesis); PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.931
Cseg_3263
TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: ccs:CCNA_01063 putative UDP-perosamine 4-acetyl transferase.
  
 0.893
Cseg_1546
Manually curated; KEGG: ccs:CCNA_01552 polar localization protein TipN.
       0.743
Cseg_1866
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: mmr:Mmar10_1691 polysaccharide export protein.
 
  
 0.643
Cseg_0718
PFAM: polysaccharide biosynthesis protein CapD; KEGG: ccs:CCNA_03316 UDP-N-acetylglucosamine 4,6-dehydratase/UDP-D-quinovosamine 4-dehydrogenase.
 
  
 0.614
Cseg_3989
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: ccs:CCNA_00168 putative capsule polysaccharide export protein.
 
  
 0.614
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.599
Cseg_0509
PFAM: polysaccharide biosynthesis protein; KEGG: mlo:mll5270 succinoglycan transport protein.
 
  
 0.555
Cseg_1865
PFAM: lipopolysaccharide biosynthesis protein; KEGG: rru:Rru_A3715 lipopolysaccharide biosynthesis.
 
  
 0.542
Cseg_3262
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ccs:CCNA_01064 perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.536
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.