STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1570PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_01576 transporter. (429 aa)    
Predicted Functional Partners:
Cseg_1571
KEGG: ccs:CCNA_01577 2-keto-4-pentenoate hydratase family protein.
 
    0.752
Cseg_1774
PFAM: RhaT l-rhamnose-proton symport 2; KEGG: hba:Hbal_2761 RhaT L-rhamnose-proton symport 2.
  
    0.560
Cseg_1569
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cak:Caul_1765 oxidoreductase domain-containing protein.
  
    0.517
Cseg_2732
KEGG: ote:Oter_1170 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
  
     0.498
Cseg_3071
PFAM: major facilitator superfamily MFS_1; KEGG: bcj:BCAM2790 putative 3-hydroxyphenylpropionic transporter MhpT.
  
     0.453
Cseg_1572
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: ccs:CCNA_01578 beta-lactamase repressor.
       0.448
Cseg_1568
PFAM: glucose sorbosone dehydrogenase; NHL repeat containing protein; KEGG: ccs:CCNA_01575 hypothetical protein.
       0.438
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.