STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1571KEGG: ccs:CCNA_01577 2-keto-4-pentenoate hydratase family protein. (274 aa)    
Predicted Functional Partners:
Cseg_3019
PFAM: HpcH/HpaI aldolase; KEGG: rpe:RPE_1802 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.759
Cseg_1570
PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_01576 transporter.
 
    0.752
Cseg_0493
KEGG: pzu:PHZ_c2460 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain.
 
    0.630
Cseg_1567
KEGG: pzu:PHZ_c2460 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
    0.600
Cseg_3743
KEGG: cak:Caul_0288 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
    0.594
Cseg_0550
PFAM: Tetratricopeptide TPR_4; KEGG: ccs:CCNA_00516 integral membrane protein.
  
     0.573
Cseg_2830
KEGG: ccs:CCNA_02262 laminin G domain protein.
 
     0.564
Cseg_3740
TonB-dependent receptor; KEGG: ccs:CCNA_00455 N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter NagA; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
    0.545
Cseg_1741
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: avi:Avi_5440 hypothetical protein.
  
  
 0.541
Cseg_0967
KEGG: ccs:CCNA_02923 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
 
    0.521
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.