STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1603KEGG: ccs:CCNA_01373 hypothetical protein. (268 aa)    
Predicted Functional Partners:
Cseg_1252
PFAM: 3D domain protein; KEGG: ccs:CCNA_01181 hypothetical protein.
   
  
 0.962
Cseg_1604
ABC transporter related protein; KEGG: ccs:CCNA_01374 Fe-S cluster assembly ABC-type transport system, permease and ATPase components; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
       0.792
Cseg_4231
KEGG: ccs:CCNA_03873 hypothetical protein.
   
    0.690
Cseg_1605
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ccs:CCNA_01375 lactoylglutathione lyase.
       0.592
Cseg_1602
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_01372 lysine decarboxylase family; Belongs to the LOG family.
       0.590
Cseg_1433
Peptidase M23; KEGG: ccs:CCNA_02075 peptidoglycan-specific endopeptidase, M23 family; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
     
 0.566
Cseg_0918
PFAM: Ferritin Dps family protein; KEGG: ccs:CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase; Belongs to the Dps family.
   
  
 0.556
Cseg_0130
PFAM: flavodoxin/nitric oxide synthase; KEGG: cak:Caul_4769 flavodoxin/nitric oxide synthase.
   
  
 0.555
Cseg_1951
Flavoprotein WrbA; KEGG: ccs:CCNA_00833 Trp repressor binding protein; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase.
   
  
 0.555
Cseg_3539
KEGG: pzu:PHZ_c3365 hypothetical protein; PFAM: transport-associated; SMART: Transport-associated and nodulation region.
  
  
 0.547
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.