STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1608PFAM: Amylo-alpha-16-glucosidase; KEGG: cak:Caul_1779 amylo-alpha-16-glucosidase. (720 aa)    
Predicted Functional Partners:
Cseg_1609
PFAM: glycosyl transferase group 1; KEGG: pzu:PHZ_p0023 glycosyltransferase.
 
 
 0.955
Cseg_0080
KEGG: ccs:CCNA_00083 phosphoglucomutase/phosphomannomutase; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase.
   
  
 0.648
Cseg_1610
KEGG: ccs:CCNA_01377 hypothetical protein.
       0.490
Cseg_3982
PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: fjo:Fjoh_4428 glycoside hydrolase family protein.
 
    0.481
Cseg_2940
KEGG: ccs:CCNA_02369 alpha-amylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
 
 
 0.409
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.