STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1625Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ccs:CCNA_01390 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (421 aa)    
Predicted Functional Partners:
Cseg_1624
PFAM: YCII-related; KEGG: mno:Mnod_1364 YCII-related.
     0.970
Cseg_0368
PFAM: YCII-related; KEGG: ccs:CCNA_00394 cytosolic protein.
 
     0.792
Cseg_1623
PFAM: acyltransferase 3; KEGG: ccs:CCNA_01389 acetyltransferase.
       0.722
Cseg_1622
PFAM: (Uracil-5)-methyltransferase; KEGG: ccs:CCNA_01387 tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.660
Cseg_1522
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ccs:CCNA_01338 glyoxalase family protein.
 
    0.574
Cseg_3827
PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: ret:RHE_CH01176 hypothetical protein.
 
    0.505
Cseg_3929
KEGG: ccs:CCNA_03634 hypothetical protein.
 
     0.435
Cseg_1621
KEGG: ccs:CCNA_01386 hypothetical protein.
       0.428
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.