STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1627KEGG: ccs:CCNA_01392 glycosyltransferase involved in cell wall biogenesis. (151 aa)    
Predicted Functional Partners:
Cseg_3993
PFAM: O-antigen polymerase; KEGG: ccs:CCNA_00164 O-antigen polymerase.
 
  
 0.684
Cseg_0441
KEGG: ccs:CCNA_00667 capsular polysaccharide biosynthesis protein.
 
     0.671
Cseg_3934
PFAM: protein of unknown function DUF1353; KEGG: cak:Caul_4690 hypothetical protein.
  
     0.652
Cseg_0133
KEGG: ccs:CCNA_03665 hypothetical protein.
  
     0.650
Cseg_4208
KEGG: ccs:CCNA_03813 intermediate filament-like cell shape determinant CreS.
 
 
 0.640
Cseg_0950
PFAM: GtrA family protein; KEGG: ccs:CCNA_02984 monosaccharide translocase (flippase type).
 
  
 0.627
Cseg_2139
KEGG: ccs:CCNA_01924 capsular polysaccharide biosynthesis protein.
 
     0.627
Cseg_3808
KEGG: cak:Caul_0228 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; glycoside hydrolase family 18; glycosyl transferase family 2; SMART: chitinase II.
 
 
 0.623
Cseg_1153
PFAM: band 7 protein; KEGG: ccs:CCNA_02619 stomatin/prohibitin-related protein.
  
 
   0.592
Cseg_0773
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ccs:CCNA_03291 hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.590
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.