STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1641PFAM: cytochrome c class I; KEGG: bja:bll5053 putative cytochrome c binding protein. (325 aa)    
Predicted Functional Partners:
Cseg_1884
KEGG: ccs:CCNA_01468 cytochrome cbb3 oxidase, cytochrome c subunit CcoO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
  
 
 0.784
Cseg_1883
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: ccr:CC_1401 cytochrome c oxidase, CcoN subunit; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.741
Cseg_0101
KEGG: cak:Caul_4778 putative signal peptide protein.
  
 
 0.647
Cseg_1642
PFAM: Uncharacterised conserved protein UCP07580; KEGG: ccs:CCNA_01406 predicted metal-dependent hydrolase.
       0.507
Cseg_1162
PFAM: cytochrome c class I; KEGG: ccs:CCNA_01144 cytochrome c oxidase polypeptide II.
 
  
 0.463
Cseg_0538
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.457
Cseg_2515
PFAM: copper resistance protein CopC; KEGG: pzu:PHZ_p0225 copper resistance protein C precursor.
    
   0.451
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.