STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1700KEGG: ara:Arad_7847 hypothetical protein. (458 aa)    
Predicted Functional Partners:
Cseg_1701
Protein of unknown function DUF955; KEGG: nwi:Nwi_0265 XRE family transcriptional regulator; PFAM: protein of unknown function DUF955; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
     0.953
Cseg_1702
KEGG: nwi:Nwi_0266 hypothetical protein.
       0.791
Cseg_1699
KEGG: eba:ebA2389 hypothetical protein.
       0.773
Cseg_0801
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: ccs:CCNA_03260 queuosine biosynthesis protein QueD.
  
  
 0.722
Cseg_1880
KEGG: pzu:PHZ_c0700 6-pyruvoyl tetrahydrobiopterin synthase.
  
  
 0.722
queE
Radical SAM domain protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.
  
  
 0.705
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.
  
  
 0.628
Cseg_1941
KEGG: ccs:CCNA_01529 hypothetical protein.
    
   0.453
cysC
Sulfate adenylyltransferase, large subunit; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.420
Cseg_1703
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppu:PP_3974 LysR family transcriptional regulator.
       0.402
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.