STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1747Regulatory protein GntR HTH; KEGG: mbt:JTY_3080 putative transcriptional regulatory protein; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH. (377 aa)    
Predicted Functional Partners:
Cseg_1476
KEGG: ccs:CCNA_01290 hypothetical protein.
  
     0.604
Cseg_1723
PFAM: Acyl-CoA dehydrogenase type 2 domain; acyl-CoA dehydrogenase domain protein; KEGG: avi:Avi_5062 possible oxidoreductase.
  
   
 0.596
Cseg_2255
KEGG: ccs:CCNA_02045 acetyl-coenzyme A synthetase.
  
   
 0.507
Cseg_1728
PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: avi:Avi_7417 oxidoreductase.
  
   
 0.488
Cseg_1214
PFAM: cytochrome P450; KEGG: ccs:CCNA_02579 cytochrome P450.
  
     0.444
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.