STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1768PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hba:Hbal_2755 short-chain dehydrogenase/reductase SDR. (253 aa)    
Predicted Functional Partners:
Cseg_2740
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hba:Hbal_2755 short-chain dehydrogenase/reductase SDR.
  
  
 
0.900
lldD
FMN-dependent alpha-hydroxy acid dehydrogenase; Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain; Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.
   
 
 0.785
Cseg_1769
KEGG: met:M446_4911 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
  
    0.741
Cseg_1732
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nar:Saro_0794 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.724
Cseg_3054
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ace:Acel_1040 short-chain dehydrogenase/reductase SDR.
  
     0.718
Cseg_1766
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.
  
 
 0.710
rhmD
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
     0.705
Cseg_1772
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hba:Hbal_2758 short-chain dehydrogenase/reductase SDR.
 
    
0.558
Cseg_1773
PFAM: amidohydrolase 2; KEGG: bac:BamMC406_1211 amidohydrolase 2.
 
    0.528
rhmD-2
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
     0.476
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.