STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1773PFAM: amidohydrolase 2; KEGG: bac:BamMC406_1211 amidohydrolase 2. (299 aa)    
Predicted Functional Partners:
rhmD
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
   
 0.864
Cseg_1772
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hba:Hbal_2758 short-chain dehydrogenase/reductase SDR.
 
    0.824
Cseg_1771
KEGG: cak:Caul_3609 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.
 
     0.803
Cseg_1833
KEGG: cak:Caul_1547 pyridoxal 4-dehydrogenase; PFAM: aldo/keto reductase.
 
  
 0.685
Cseg_1774
PFAM: RhaT l-rhamnose-proton symport 2; KEGG: hba:Hbal_2761 RhaT L-rhamnose-proton symport 2.
 
     0.677
Cseg_1828
PFAM: protein of unknown function DUF718; KEGG: cak:Caul_1543 hypothetical protein.
 
  
 0.638
Cseg_3309
PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_2075 major facilitator transporter.
  
  
 0.598
rhmD-2
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
   
 0.590
Cseg_1232
PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_01159 transporter, major facilitator superfamily.
  
  
 0.556
Cseg_1836
KEGG: cak:Caul_1551 L-fucose transporter; TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1.
  
  
 0.556
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.