STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1776KEGG: swi:Swit_1100 hypothetical protein. (952 aa)    
Predicted Functional Partners:
Cseg_1782
PFAM: alpha-L-rhamnosidase; KEGG: ote:Oter_3716 alpha-L-rhamnosidase.
 
     0.809
Cseg_1766
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.
 
     0.750
Cseg_2730
PFAM: lipolytic protein G-D-S-L family; KEGG: ote:Oter_1336 GDSL family lipase.
 
 0.732
Cseg_1774
PFAM: RhaT l-rhamnose-proton symport 2; KEGG: hba:Hbal_2761 RhaT L-rhamnose-proton symport 2.
 
     0.686
Cseg_1900
Alpha-L-fucosidase; KEGG: ote:Oter_4283 alpha/beta hydrolase domain-containing protein.
 
 
 
 0.678
Cseg_2733
KEGG: sus:Acid_0532 hypothetical protein.
 
 
 0.667
Cseg_1780
KEGG: cak:Caul_2402 hypothetical protein.
 
     0.632
Cseg_1837
KEGG: ccs:CCNA_00837 alpha-L-fucosidase; PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); SMART: glycoside hydrolase family 29 (alpha-L-fucosidase).
  
     0.625
rhaM
Protein of unknown function DUF718; Involved in the anomeric conversion of L-rhamnose.
 
     0.616
Cseg_2738
PFAM: lipolytic protein G-D-S-L family; KEGG: cpi:Cpin_5506 lipolytic protein G-D-S-L family.
 
 0.601
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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