STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1804KEGG: sfr:Sfri_3018 hypothetical protein. (284 aa)    
Predicted Functional Partners:
Cseg_1803
PFAM: Cupin 2 conserved barrel domain protein; KEGG: cpi:Cpin_5381 cupin 2 conserved barrel domain protein.
       0.506
Cseg_1805
KEGG: cak:Caul_3607 gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I.
       0.425
Cseg_1806
PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: cak:Caul_3606 2Fe-2S iron-sulfur cluster binding domain-containing protein.
       0.425
Cseg_1807
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: cak:Caul_3605 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
       0.425
Cseg_1802
PFAM: alpha/beta hydrolase fold; KEGG: mva:Mvan_1601 hypothetical protein.
       0.401
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.