STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1832KEGG: cak:Caul_1546 D-galactarate dehydratase/altronate hydrolase-like protein. (98 aa)    
Predicted Functional Partners:
Cseg_1831
KEGG: cak:Caul_1545 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein.
 
     0.946
Cseg_1835
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: atc:AGR_C_5103 hypothetical zinc-type alcohol dehydrogenase-like protein in TSR-MDOB intergenic region.
 
   
 0.823
Cseg_1834
PFAM: amidohydrolase 2; KEGG: cak:Caul_1549 amidohydrolase 2.
 
   
 0.815
Cseg_1833
KEGG: cak:Caul_1547 pyridoxal 4-dehydrogenase; PFAM: aldo/keto reductase.
 
     0.809
Cseg_1830
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_1544 short-chain dehydrogenase/reductase SDR.
 
     0.799
Cseg_1836
KEGG: cak:Caul_1551 L-fucose transporter; TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1.
       0.782
Cseg_1828
PFAM: protein of unknown function DUF718; KEGG: cak:Caul_1543 hypothetical protein.
     
 0.724
Cseg_1829
KEGG: oan:Oant_0318 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase.
       0.708
Cseg_1827
KEGG: cak:Caul_1548 IclR family transcriptional regulator; PFAM: regulatory protein IclR; SMART: regulatory protein IclR.
 
  
 0.632
uxaC
KEGG: ccs:CCNA_01557 uronate isomerase; PFAM: Glucuronate isomerase.
 
  
 0.596
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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