STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1844Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: ccs:CCNA_01712 beta-lactamase repressor. (127 aa)    
Predicted Functional Partners:
Cseg_1843
PFAM: peptidase M56 BlaR1; Ankyrin; KEGG: ccs:CCNA_01711 transcriptional regulator.
 
  
 0.945
Cseg_1015
PFAM: peptidase M56 BlaR1; KEGG: ccs:CCNA_02840 transcriptional regulator.
 
  
 0.852
Cseg_3535
PFAM: peptidase M56 BlaR1; KEGG: cak:Caul_3733 peptidase M56 BlaR1.
 
  
 0.845
Cseg_0805
PFAM: peptidase M56 BlaR1; KEGG: ccs:CCNA_03253 hypothetical protein.
 
  
 0.798
Cseg_0806
PFAM: peptidase M56 BlaR1; KEGG: ccs:CCNA_03253 hypothetical protein.
 
  
 0.731
Cseg_1841
KEGG: ccs:CCNA_01709 hypothetical protein.
       0.628
Cseg_1842
PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: ccs:CCNA_01710 GMC family oxidoreductase.
       0.628
Cseg_1845
KEGG: cak:Caul_3282 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
       0.418
Cseg_1846
PFAM: FecR protein; KEGG: cak:Caul_3281 anti-FecI sigma factor, FecR.
       0.418
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.