STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1845KEGG: cak:Caul_3282 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (225 aa)    
Predicted Functional Partners:
Cseg_1846
PFAM: FecR protein; KEGG: cak:Caul_3281 anti-FecI sigma factor, FecR.
 
   0.956
Cseg_1819
PFAM: FecR protein; KEGG: cak:Caul_4078 anti-FecI sigma factor, FecR.
 
 
 0.826
Cseg_0495
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccs:CCNA_01188 FecR family protein.
 
 
 0.824
Cseg_0597
PFAM: FecR protein; KEGG: cak:Caul_2727 anti-FecI sigma factor, FecR.
 
 
 0.823
Cseg_3320
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccs:CCNA_01033 FecR family protein.
 
 
 0.822
Cseg_0492
PFAM: FecR protein; KEGG: cak:Caul_3281 anti-FecI sigma factor, FecR.
 
   0.817
Cseg_0484
PFAM: FecR protein; KEGG: cak:Caul_2649 anti-FecI sigma factor, FecR.
 
   0.815
Cseg_2561
PFAM: FecR protein; KEGG: cak:Caul_2244 anti-FecI sigma factor, FecR.
 
   0.815
Cseg_2998
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pzu:PHZ_c2234 transcriptional regulator.
 
   0.815
Cseg_2425
PFAM: FecR protein; KEGG: cak:Caul_1860 anti-FecI sigma factor, FecR.
 
   0.814
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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