STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1875KEGG: sus:Acid_0420 sugar isomerase family protein. (207 aa)    
Predicted Functional Partners:
Cseg_1876
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sus:Acid_0418 GHMP kinase.
 
 
 0.997
Cseg_1877
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: bpr:GBP346_A3421 D-glycero-D-manno-heptose 7-phosphate kinase.
 
 
 0.996
Cseg_1878
PFAM: Nucleotidyl transferase; KEGG: cak:Caul_4933 histidinol-phosphate phosphatase family protein.
 
  
 0.982
Cseg_1874
Manually curated; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: sus:Acid_0421 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase.
 
  
 0.978
hldE
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
  
 0.978
Cseg_4102
KEGG: ccs:CCNA_03731 histidinol-phosphatase; TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; histidinol-phosphate phosphatase family protein; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; Belongs to the gmhB family.
 
  
 0.924
Cseg_1873
Transaldolase; KEGG: sus:Acid_0551 putative translaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase.
 
     0.892
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
    
 
 0.697
Cseg_2914
KpsF/GutQ family protein; SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: ccs:CCNA_02346 arabinose-5-phosphate isomerase; PFAM: sugar isomerase (SIS); CBS domain containing protein; Belongs to the SIS family. GutQ/KpsF subfamily.
 
   
 0.653
Cseg_1870
KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase.
  
  
 0.624
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.