STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1891SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: pzu:PHZ_c2806 oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (459 aa)    
Predicted Functional Partners:
Cseg_1883
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: ccr:CC_1401 cytochrome c oxidase, CcoN subunit; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.942
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.941
Cseg_1884
KEGG: ccs:CCNA_01468 cytochrome cbb3 oxidase, cytochrome c subunit CcoO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
 
  
 0.937
Cseg_1887
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ccs:CCNA_01471 polyferredoxin protein FixG.
 
  
 0.925
hemF
Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
    
 0.921
Cseg_4227
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_03877 hypothetical protein.
    
 0.918
Cseg_1886
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.911
Cseg_3032
SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: ccs:CCNA_01477 oxygen-independent coproporphyrinogen-III oxidase HemN; PFAM: HemN domain protein; Radical SAM domain protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 
0.906
Cseg_1892
PFAM: OmpW family protein; KEGG: ccs:CCNA_01475 OmpW family outer membrane protein.
 
  
 0.889
Cseg_1888
PFAM: FixH family protein; KEGG: ccs:CCNA_01472 cation pump-linked membrane protein FixH.
 
    0.778
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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