STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1892PFAM: OmpW family protein; KEGG: ccs:CCNA_01475 OmpW family outer membrane protein. (214 aa)    
Predicted Functional Partners:
Cseg_1891
SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: pzu:PHZ_c2806 oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.889
Cseg_1884
KEGG: ccs:CCNA_01468 cytochrome cbb3 oxidase, cytochrome c subunit CcoO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
 
    0.867
Cseg_1883
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: ccr:CC_1401 cytochrome c oxidase, CcoN subunit; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.854
Cseg_1887
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: ccs:CCNA_01471 polyferredoxin protein FixG.
 
    0.820
Cseg_3032
SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: ccs:CCNA_01477 oxygen-independent coproporphyrinogen-III oxidase HemN; PFAM: HemN domain protein; Radical SAM domain protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.779
Cseg_1886
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
    0.731
Cseg_1885
PFAM: Cbb3-type cytochrome oxidase component; KEGG: ccs:CCNA_01469 cytochrome cbb3 oxidase, subunit CcoQ.
 
    0.701
Cseg_0272
PFAM: protein of unknown function DUF344; KEGG: ccs:CCNA_03529 polyphosphate kinase.
   
    0.695
Cseg_0101
KEGG: cak:Caul_4778 putative signal peptide protein.
  
  
 0.576
Cseg_1888
PFAM: FixH family protein; KEGG: ccs:CCNA_01472 cation pump-linked membrane protein FixH.
  
    0.572
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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