STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1893PFAM: Luciferase-like, subgroup; KEGG: ccs:CCNA_01227 nitrilotriacetate monooxygenase. (354 aa)    
Predicted Functional Partners:
Cseg_1894
PFAM: isochorismatase hydrolase; KEGG: cak:Caul_1793 isochorismatase hydrolase.
 
    0.883
rutB
Pyrimidine utilization protein B; In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2; Belongs to the isochorismatase family. RutB subfamily.
 
    0.764
Cseg_1791
KEGG: cak:Caul_1794 hypothetical protein.
 
     0.667
Cseg_1790
PFAM: isochorismatase hydrolase; KEGG: cak:Caul_1793 isochorismatase hydrolase.
 
    0.638
rutD
Pyrimidine utilization protein D; May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation. Belongs to the AB hydrolase superfamily. Hydrolase RutD family.
 
    0.613
Cseg_1042
PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_02742 oxalate/formate antiporter.
 
    0.601
Cseg_1788
PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_1791 major facilitator transporter.
 
    0.562
Cseg_2022
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; KEGG: swi:Swit_2508 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein; SMART: extracellular solute-binding protein family 3.
 
  
 0.554
Cseg_2031
KEGG: cak:Caul_2662 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
 
  
 0.550
Cseg_2026
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cak:Caul_2657 binding-protein-dependent transport systems inner membrane component.
 
  
 0.505
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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