STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1895Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (379 aa)    
Predicted Functional Partners:
Cseg_1896
KEGG: cak:Caul_3616 galactose 1-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain.
 
 
 0.975
Cseg_1825
Beta-galactosidase; KEGG: cak:Caul_4083 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.939
Cseg_3275
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: cak:Caul_4083 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.937
Cseg_3324
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ccs:CCNA_01018 D-galactose 1-dehydrogenase.
 
 
 0.930
Cseg_1823
KEGG: xcv:XCV3214 beta-galactosidase; PFAM: glycoside hydrolase family 35.
 
 
 0.923
Cseg_1839
KEGG: ote:Oter_1363 hypothetical protein.
  
 
  0.908
glk
TIGRFAM: glucokinase; KEGG: ccs:CCNA_02133 glucokinase; PFAM: Glucokinase; Belongs to the bacterial glucokinase family.
    
 0.907
Cseg_3984
Glucokinase; KEGG: cak:Caul_4974 glucokinase; PFAM: Glucokinase; Belongs to the bacterial glucokinase family.
    
 0.907
Cseg_2011
Alpha-galactosidase; PFAM: glycoside hydrolase clan GH-D; Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: cak:Caul_2412 alpha-galactosidase; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module.
  
 
  0.903
Cseg_0599
PFAM: Aldose 1-epimerase; KEGG: ccs:CCNA_03432 aldose 1-epimerase.
     
  0.900
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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