STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1897PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cak:Caul_3615 hypothetical protein. (331 aa)    
Predicted Functional Partners:
Cseg_1896
KEGG: cak:Caul_3616 galactose 1-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain.
 
    0.933
Cseg_1895
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
     0.734
Cseg_3324
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ccs:CCNA_01018 D-galactose 1-dehydrogenase.
 
    0.718
Cseg_3552
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ccr:CC_0823 hypothetical protein.
 
     0.692
Cseg_1898
KEGG: ccs:CCNA_01488 galactonate dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
     0.548
Cseg_4055
TIGRFAM: maleylacetoacetate isomerase; KEGG: ccs:CCNA_03683 maleylpyruvate isomerase; PFAM: Glutathione S-transferase domain.
     
  0.499
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.