STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1899alpha-L-arabinofuranosidase domain protein; KEGG: ccs:CCNA_01489 alpha-L-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein. (518 aa)    
Predicted Functional Partners:
Cseg_2015
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cak:Caul_2415 alpha-N-arabinofuranosidase; SMART: alpha-L-arabinofuranosidase domain protein.
  
  
 
0.905
uxaC
KEGG: ccs:CCNA_01557 uronate isomerase; PFAM: Glucuronate isomerase.
     
 0.826
Cseg_1900
Alpha-L-fucosidase; KEGG: ote:Oter_4283 alpha/beta hydrolase domain-containing protein.
 
     0.812
Cseg_1839
KEGG: ote:Oter_1363 hypothetical protein.
 
   
 0.753
Cseg_0974
Alpha-glucuronidase; KEGG: ccs:CCNA_02902 xylan alpha-1,2-glucuronosidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycoside hydrolase family 67; glycosyl hydrolase 67 C-teriminal domain protein; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.749
Cseg_2013
Xylan 1,4-beta-xylosidase; KEGG: cak:Caul_2413 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.739
Cseg_0977
Xylan 1,4-beta-xylosidase; KEGG: ccs:CCNA_02893 beta-xylosidase/alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.726
Cseg_2735
PFAM: FG-GAP repeat protein; KEGG: bsu:BSU07050 polysaccharide lyase; lipoprotein.
 
  
 0.704
Cseg_3135
KEGG: ccr:CC_0543 hypothetical protein.
 
     0.690
Cseg_2730
PFAM: lipolytic protein G-D-S-L family; KEGG: ote:Oter_1336 GDSL family lipase.
  
   
 0.668
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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