Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cseg_1908PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: ccs:CCNA_00683 hypothetical protein. (501 aa)    
Predicted Functional Partners:
Cseg_4136
Uncharacterized conserved protein UCP037205; KEGG: nar:Saro_0891 hypothetical protein; manually curated; PFAM: Uncharacterised conserved protein UCP037205.
 
     0.721
Cseg_1910
KEGG: ccs:CCNA_01495 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein.
 
   
 0.567
Cseg_1907
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ccs:CCNA_01493 cysteine synthase.
       0.541
Cseg_3283
PFAM: protein of unknown function DUF1365; KEGG: mlo:mll8086 hypothetical protein.
 
   
 0.522
Cseg_1906
Rhodanese domain protein; KEGG: ccs:CCNA_01492 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
       0.512
Cseg_3282
PFAM: amine oxidase; KEGG: pzu:PHZ_c3058 amine oxidase, flavin-containing protein.
 
   
 0.512
Cseg_3087
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_03074 C factor cell-cell signaling protein.
 
     0.456
Cseg_1905
KEGG: ccs:CCNA_01491 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
       0.400
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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