STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2026PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cak:Caul_2657 binding-protein-dependent transport systems inner membrane component. (269 aa)    
Predicted Functional Partners:
ssuB
ABC transporter related protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 
 0.998
Cseg_2031
KEGG: cak:Caul_2662 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
 
 
 0.996
Cseg_2022
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; KEGG: swi:Swit_2508 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein; SMART: extracellular solute-binding protein family 3.
 
 
 0.991
Cseg_2036
KEGG: cak:Caul_2667 alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup.
 
 
 0.982
Cseg_2028
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: cak:Caul_2659 acyl-CoA dehydrogenase type 2.
 
    0.880
Cseg_1066
ABC transporter related protein; KEGG: ccs:CCNA_02717 maltose/maltodextrin transport ATP-binding protein MalK; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.868
Cseg_2062
TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; KEGG: ccs:CCNA_00647 nitrate transport ATP-binding protein NrtD; SMART: AAA ATPase.
 
  
 0.835
Cseg_2029
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: cak:Caul_2660 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
 
     0.811
Cseg_2030
PFAM: class II aldolase/adducin family protein; KEGG: cak:Caul_2661 class II aldolase/adducin family protein.
       0.746
Cseg_2060
PFAM: NMT1/THI5 like domain protein; KEGG: cak:Caul_2958 nitrate transporter.
 
  
 0.710
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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