STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2083PFAM: TonB-dependent receptor plug; KEGG: sal:Sala_2744 putative outer membrane protein with a TonB box. (1080 aa)    
Predicted Functional Partners:
Cseg_2258
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02048 TonB-dependent receptor.
  
    0.699
Cseg_0962
PFAM: peptidase M28; KEGG: ccs:CCNA_02933 aminopeptidase.
  
     0.635
Cseg_1165
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01149 TonB-dependent outer membrane receptor.
  
   
 0.628
Cseg_3810
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_00338 TonB-dependent receptor.
  
    0.628
Cseg_2367
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1136 TonB-dependent receptor.
  
    0.627
Cseg_2979
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: hne:HNE_1470 putative TonB dependent receptor.
  
    0.627
Cseg_3190
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rce:RC1_0326 TonB dependent receptor, putative.
  
   
 0.600
Cseg_1750
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: swi:Swit_1573 TonB-dependent receptor.
  
    0.598
Cseg_2443
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1901 TonB-dependent receptor.
  
    0.594
Cseg_2082
PFAM: adenosine/AMP deaminase; KEGG: cak:Caul_4066 adenosine/AMP deaminase.
       0.580
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.