STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2095Hydrolase CocE/NonD family protein; KEGG: ccs:CCNA_01694 7 beta-(4-carboxybutanamido)cephalosporanic acid acylase; TIGRFAM: hydrolase CocE/NonD family protein; PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein. (625 aa)    
Predicted Functional Partners:
Cseg_2096
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ccs:CCNA_01693 transcriptional regulator, LysR family.
 
     0.760
Cseg_2094
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01695 TonB-dependent outer membrane receptor.
 
     0.571
Cseg_2093
PFAM: Capsule synthesis protein, CapA; KEGG: ccs:CCNA_01697 putative poly-gamma-glutamate capsule biosynthesis protein.
 
     0.449
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.