STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2096Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ccs:CCNA_01693 transcriptional regulator, LysR family. (300 aa)    
Predicted Functional Partners:
Cseg_2095
Hydrolase CocE/NonD family protein; KEGG: ccs:CCNA_01694 7 beta-(4-carboxybutanamido)cephalosporanic acid acylase; TIGRFAM: hydrolase CocE/NonD family protein; PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein.
 
     0.760
Cseg_2025
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cak:Caul_2656 LysR family transcriptional regulator.
  
     0.750
Cseg_3337
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ccs:CCNA_03625 transcriptional regulator, LysR family protein.
  
     0.706
Cseg_1953
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ccs:CCNA_01541 transcriptional regulator, LysR family.
  
     0.695
Cseg_3957
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cak:Caul_1466 LysR family transcriptional regulator.
  
     0.693
Cseg_2045
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bid:Bind_1436 LysR family transcriptional regulator.
  
     0.659
Cseg_3666
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cak:Caul_4031 LysR family transcriptional regulator.
  
     0.648
Cseg_3769
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: swi:Swit_0554 LysR family transcriptional regulator.
  
     0.637
Cseg_2975
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bvi:Bcep1808_2561 LysR family transcriptional regulator.
  
     0.635
Cseg_3399
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cak:Caul_0998 LysR family transcriptional regulator.
  
     0.603
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.