STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2105KEGG: gsu:GSU0801 hypothetical protein. (446 aa)    
Predicted Functional Partners:
Cseg_2102
PFAM: Amidohydrolase 3; KEGG: reu:Reut_B4849 hypothetical protein.
 
     0.935
Cseg_2103
PFAM: DoxX family protein; KEGG: azc:AZC_3608 hypothetical protein.
 
     0.830
Cseg_2104
PFAM: protein of unknown function DUF1275; KEGG: rso:RSc0238 putative permease transmembrane protein.
 
     0.809
Cseg_2100
PFAM: isochorismatase hydrolase; KEGG: xau:Xaut_1277 isochorismatase hydrolase.
 
     0.742
Cseg_2101
XapX domain protein; KEGG: smd:Smed_3973 hypothetical protein; TIGRFAM: XapX domain protein; PFAM: protein of unknown function DUF1427.
 
     0.710
Cseg_2201
PFAM: outer membrane chaperone Skp (OmpH); KEGG: ccs:CCNA_01991 hypothetical protein.
    
 
 0.521
rpsU
KEGG: ccs:CCNA_03406 SSU ribosomal protein S21P; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 
 0.448
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.413
Cseg_0096
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: gem:GM21_1016 putative transcriptional regulator.
   
    0.405
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.