STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2177PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: ccs:CCNA_01964 NADH dehydrogenase. (131 aa)    
Predicted Functional Partners:
Cseg_2176
PFAM: Protein of unknown function DUF2155; KEGG: ccr:CC_1886 hypothetical protein.
 
     0.909
Cseg_1689
PFAM: ETC complex I subunit conserved region; KEGG: ccs:CCNA_01453 electron transport complex I subunit, NADH-ubiquinone oxidoreductase.
  
    0.797
Cseg_1315
PFAM: protein of unknown function DUF1321; KEGG: ccs:CCNA_02187 hypothetical protein.
 
   
 0.759
Cseg_0604
PFAM: Protein of unknown function DUF2312; KEGG: ccs:CCNA_03428 cytosolic protein; Belongs to the UPF0335 family.
  
   
 0.757
Cseg_1665
PFAM: SmpA/OmlA domain protein; KEGG: ccs:CCNA_01427 lipoprotein, SmpA/OmlA family.
  
   
 0.705
Cseg_0629
PFAM: protein of unknown function DUF1013; KEGG: ccs:CCNA_03401 cytosolic protein.
  
   
 0.648
Cseg_3129
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_02430 conserved cytosolic protein; Belongs to the UPF0262 family.
  
   
 0.602
Cseg_2674
PFAM: GcrA cell cycle regulator; KEGG: ccs:CCNA_01269 hypothetical protein.
  
   
 0.595
Cseg_2897
PFAM: GcrA cell cycle regulator; KEGG: ccs:CCNA_02328 hypothetical protein.
  
   
 0.582
Cseg_3428
PFAM: cytochrome c class I; KEGG: ccs:CCNA_03030 cytochrome c.
  
     0.561
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.