STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2244KEGG: ccs:CCNA_02035 glycosyltransferase; manually curated; PFAM: glycosyl transferase group 1. (402 aa)    
Predicted Functional Partners:
Cseg_2245
Manually curated; KEGG: cak:Caul_2840 hypothetical protein.
       0.581
Cseg_2246
KEGG: cak:Caul_2841 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein.
       0.581
Cseg_4122
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.513
Cseg_4159
KEGG: ccs:CCNA_03826 hypothetical protein.
  
     0.494
Cseg_1870
KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase.
  
  
 0.492
Cseg_2765
KEGG: ccr:CC_2425 HfsE; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.492
Cseg_1878
PFAM: Nucleotidyl transferase; KEGG: cak:Caul_4933 histidinol-phosphate phosphatase family protein.
 
 
 0.486
Cseg_0632
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_03398 hypothetical protein.
  
     0.480
Cseg_2250
KEGG: ccs:CCNA_02040 phosphoserine phosphatase; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase.
 
  
 0.450
Cseg_4092
KEGG: ccs:CCNA_03722 glutamate synthase (NADPH) large chain; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
     
 0.431
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.