STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2320PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_01728 short chain dehydrogenase. (251 aa)    
Predicted Functional Partners:
Cseg_2317
PFAM: Colicin V production protein; KEGG: ccs:CCNA_01731 colicin V production protein.
 
     0.771
Cseg_2976
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_1651 short-chain dehydrogenase/reductase SDR.
  
     0.693
Cseg_3021
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cur:cur_0024 putative short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.678
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.674
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.671
Cseg_2319
PFAM: Bile acid:sodium symporter; KEGG: ccs:CCNA_01729 transporter, sodium/bile acid symporter family.
     
 0.639
Cseg_1732
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nar:Saro_0794 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.621
Cseg_0090
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_00092 short chain dehydrogenase.
  
     0.579
Cseg_3459
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_03061 3-oxoacyl-(acyl-carrier protein) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.553
Cseg_3054
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ace:Acel_1040 short-chain dehydrogenase/reductase SDR.
  
     0.523
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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