STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2327RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ccs:CCNA_01721 RNA polymerase sigma-E factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)    
Predicted Functional Partners:
Cseg_2326
KEGG: ccs:CCNA_01722 hypothetical protein.
       0.785
Cseg_2521
KEGG: pzu:PHZ_c1475 RNA polymerase sigma-70 factor,ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
     0.773
Cseg_4035
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ccs:CCNA_03589 RNA polymerase ECF-type sigma factor SigT; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
     0.722
Cseg_2328
KEGG: cak:Caul_2493 hypothetical protein.
       0.693
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.585
Cseg_3285
TIGRFAM: anti-sigma factor, ChrR family; KEGG: ccs:CCNA_00684 transcriptional activator ChrR.
 
 
 0.560
Cseg_2330
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ccs:CCNA_01718 extracytoplasmic function alternative sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
    
0.548
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.467
Cseg_0292
Processing peptidase; KEGG: ccs:CCNA_03509 zinc protease; PFAM: peptidase M16 domain protein.
  
    0.460
Cseg_2331
KEGG: cak:Caul_2490 hypothetical protein.
       0.460
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.