STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2330RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ccs:CCNA_01718 extracytoplasmic function alternative sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)    
Predicted Functional Partners:
Cseg_2329
KEGG: ccs:CCNA_01719 hypothetical protein.
       0.785
Cseg_2331
KEGG: cak:Caul_2490 hypothetical protein.
       0.785
Cseg_1019
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ccs:CCNA_02837 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
   
 0.775
Cseg_2332
KEGG: ccs:CCNA_01716 hypothetical protein.
       0.772
Cseg_2333
KEGG: ccr:CC_1643 HAD superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
  
    0.629
Cseg_2327
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ccs:CCNA_01721 RNA polymerase sigma-E factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
    
0.548
Cseg_2328
KEGG: cak:Caul_2493 hypothetical protein.
       0.530
Cseg_0613
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ccs:CCNA_03419 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
   
 0.496
Cseg_2326
KEGG: ccs:CCNA_01722 hypothetical protein.
       0.481
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.467
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.