STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2350TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: ccs:CCNA_02489 acetate/3-ketoacid CoA transferase, subunit B; PFAM: coenzyme A transferase. (215 aa)    
Predicted Functional Partners:
Cseg_2349
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: ccs:CCNA_02488 acetate/3-ketoacid CoA transferase, subunit A; PFAM: coenzyme A transferase.
 0.999
Cseg_3946
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: ccs:CCNA_00206 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A; PFAM: coenzyme A transferase.
 0.999
Cseg_0771
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: ccs:CCNA_03293 enoyl-CoA hydratase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.964
Cseg_0532
PFAM: pyruvate carboxyltransferase; KEGG: ccs:CCNA_00500 hydroxymethylglutaryl-CoA lyase.
  
 
 0.936
Cseg_3668
KEGG: ccs:CCNA_00752 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein.
  
 
 0.921
Cseg_1758
PFAM: coenzyme A transferase; KEGG: ccs:CCNA_02488 acetate/3-ketoacid CoA transferase, subunit A.
 
 
 0.920
Cseg_0309
KEGG: ccs:CCNA_03495 D-beta-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 0.908
Cseg_0393
KEGG: ccs:CCNA_00545 acetoacetyl-CoA reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR.
  
 0.908
Cseg_3945
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: ccs:CCNA_00207 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B; PFAM: coenzyme A transferase.
  
  
 
0.901
Cseg_2348
TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; KEGG: cak:Caul_3846 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase FAD-binding.
     
 0.742
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.