STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2399KEGG: cak:Caul_1787 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight. (177 aa)    
Predicted Functional Partners:
Cseg_2400
SMART: regulatory protein ArsR; KEGG: cak:Caul_1788 ArsR family transcriptional regulator.
  
 0.862
Cseg_2398
KEGG: cak:Caul_1786 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter.
  
  
 0.815
Cseg_2397
KEGG: azc:AZC_4550 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related.
 
  
 0.751
Cseg_3994
TIGRFAM: capsular exopolysaccharide family; KEGG: ccs:CCNA_00163 chain length regulator/tyrosine-protein kinase (capsular polysaccharide biosynthesis); PFAM: lipopolysaccharide biosynthesis protein.
  
 
 0.681
Cseg_3128
KEGG: ccs:CCNA_02429 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
  
     0.619
Cseg_0109
PFAM: Thioredoxin domain; KEGG: ccs:CCNA_00109 thioredoxin.
  
 
 0.546
Cseg_0146
Thioredoxin; KEGG: ccs:CCNA_03653 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.
  
 
 0.546
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.430
Cseg_2715
PFAM: phosphopantetheine-binding; KEGG: ccs:CCNA_01221 acyl carrier protein.
   
 
 0.430
Cseg_2460
KEGG: cak:Caul_1786 arsenical-resistance protein; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter.
  
  
 0.429
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.