STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2419KEGG: cak:Caul_4130 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Cseg_3334
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: cak:Caul_1376 substrate-binding region of ABC-type glycine betaine transport system.
 
    0.687
Cseg_2420
KEGG: cak:Caul_4129 hypothetical protein.
  
    0.669
Cseg_2422
PFAM: cyclase/dehydrase; KEGG: mes:Meso_3684 cyclase/dehydrase.
 
  
 0.667
Cseg_2421
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mes:Meso_3683 alcohol dehydrogenase GroES-like protein.
 
  
 0.602
Cseg_0657
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.557
Cseg_0425
KEGG: cak:Caul_0610 sulfate transporter/antisigma-factor antagonist STAS.
   
  
 0.543
Cseg_3754
KEGG: ccs:CCNA_00440 virus protein.
   
  
 0.543
Cseg_3356
PFAM: CsbD family protein; KEGG: cak:Caul_1345 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.408
Cseg_2676
KEGG: cak:Caul_3077 hypothetical protein.
  
     0.404
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.