STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2426KEGG: cak:Caul_1859 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug. (882 aa)    
Predicted Functional Partners:
Cseg_2016
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_2400 TonB-dependent receptor.
  
     0.753
Cseg_0915
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1672 TonB-dependent receptor.
  
    0.749
Cseg_1863
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_2073 TonB-dependent receptor.
  
     0.745
Cseg_2008
SMART: transcription factor jumonji jmjC domain protein; KEGG: cak:Caul_2409 hypothetical protein.
 
     0.705
Cseg_2427
KEGG: cak:Caul_1858 hypothetical protein.
 
     0.687
Cseg_3272
SMART: transcription factor jumonji jmjC domain protein; KEGG: ccr:CC_1001 Pass1-related protein.
 
     0.656
Cseg_3421
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_2548 TonB-dependent receptor.
  
     0.655
Cseg_3764
SMART: transcription factor jumonji jmjC domain protein; KEGG: xac:XAC4050 PASs1-related protein.
 
     0.642
Cseg_2258
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02048 TonB-dependent receptor.
  
    0.635
Cseg_3483
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_1228 TonB-dependent receptor.
 
     0.634
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.