STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2489KEGG: cak:Caul_2224 hypothetical protein. (101 aa)    
Predicted Functional Partners:
Cseg_2487
Hypothetical protein; KEGG: sen:SACE_4376 LuxR family transcriptional regulator.
       0.773
Cseg_2488
KEGG: cak:Caul_2223 hypothetical protein.
       0.773
Cseg_2490
Manually curated; PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: cak:Caul_5175 exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
       0.531
Cseg_2491
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hoh:Hoch_2313 endonuclease/exonuclease/phosphatase.
       0.531
Cseg_2492
KEGG: cak:Caul_2023 hypothetical protein.
       0.449
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.