STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2494PFAM: conjugation TrbI family protein; KEGG: cak:Caul_2276 conjugation TrbI family protein. (386 aa)    
Predicted Functional Partners:
Cseg_2495
KEGG: sal:Sala_2478 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.
 
 0.999
Cseg_2500
KEGG: cak:Caul_2271 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.
 
 0.999
Cseg_2496
PFAM: Conjugal transfer protein; KEGG: cak:Caul_2274 conjugal transfer protein TrbF.
 
  
 0.996
Cseg_2497
KEGG: cak:Caul_2273 conjugal transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.
 
  
 0.996
Cseg_2502
PFAM: Conjugal transfer protein TrbC; KEGG: cak:Caul_2269 conjugal transfer protein TrbC.
 
  
 0.996
Cseg_2499
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: cak:Caul_2272 conjugal transfer protein TrbJ.
 
  
 0.995
Cseg_2501
KEGG: cak:Caul_2270 conjugal transfer protein TrbD.
 
  
 0.995
Cseg_2503
KEGG: cak:Caul_2268 P-type conjugative transfer ATPase TrbB; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.
 
  
 0.992
Cseg_2493
PFAM: Protein of unknown function DUF2274; KEGG: cak:Caul_2277 hypothetical protein.
 
   
 0.958
Cseg_2552
PFAM: TRAG family protein; KEGG: pzu:PHZ_c1509 conjugal transfer coupling protein TraG.
 
 
 
 0.910
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.