STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2555PFAM: Peptidase S26, conserved region; KEGG: cak:Caul_2250 type IV secretory pathway protease TraF-like protein. (170 aa)    
Predicted Functional Partners:
Cseg_2557
Hypothetical protein; KEGG: xau:Xaut_2867 putative transcriptional regulator.
 
     0.956
Cseg_2556
KEGG: cak:Caul_2249 hypothetical protein.
 
     0.955
Cseg_2558
PFAM: Protein of unknown function DUF2285; KEGG: cak:Caul_2247 hypothetical protein.
 
     0.867
Cseg_2553
Manually curated; KEGG: cak:Caul_2252 hypothetical protein.
 
     0.843
Cseg_2551
KEGG: cak:Caul_2257 hypothetical protein.
 
     0.842
Cseg_2552
PFAM: TRAG family protein; KEGG: pzu:PHZ_c1509 conjugal transfer coupling protein TraG.
 
     0.842
Cseg_2502
PFAM: Conjugal transfer protein TrbC; KEGG: cak:Caul_2269 conjugal transfer protein TrbC.
 
   
 0.827
Cseg_2500
KEGG: cak:Caul_2271 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.
 
   
 0.822
Cseg_2494
PFAM: conjugation TrbI family protein; KEGG: cak:Caul_2276 conjugation TrbI family protein.
 
   
 0.811
Cseg_2495
KEGG: sal:Sala_2478 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.
 
   
 0.808
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.