STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_2613Hypothetical protein; KEGG: pjd:Pjdr2_5949 transferase hexapeptide repeat containing protein. (245 aa)    
Predicted Functional Partners:
Cseg_0510
Acetyltransferase (isoleucine patch superfamily)-like protein; Manually curated; KEGG: rme:Rmet_5726 hexapaptide repeat-containing transferase.
 
     0.654
Cseg_1870
KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase.
  
  
 0.644
Cseg_2765
KEGG: ccr:CC_2425 HfsE; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.644
Cseg_3994
TIGRFAM: capsular exopolysaccharide family; KEGG: ccs:CCNA_00163 chain length regulator/tyrosine-protein kinase (capsular polysaccharide biosynthesis); PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.497
Cseg_2611
KEGG: ccs:CCNA_01669 sulfate transport system permease protein CysW; TIGRFAM: sulfate ABC transporter, inner membrane subunit CysW; sulfate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
       0.486
Cseg_2612
Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.486
cysA
Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
       0.465
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.